Dr. Walter Karlen

Post-Doctoral Fellow

walter karlen

email:

address:

Canada:
Department of Electrical and Computer Engineering
University of British Columbia
2332 Main Mall
Vancouver, BC V6T 1Z4, Canada

South Africa:
Department of Mechanical and Mechatronics Engineering
University of Stellenbosch
Private Bag X1
Matieland 7602 South Africa

www:

www.ece.ubc.ca/~walterk

Research Interests

Biomedical signal processing, machine learning, adaptive algorithms and systems, embedded and wearable devices, mobile computing, biomedical sensors and systems, global health, decision support, pulse oximeter, capnography, pneumonia, anesthesia, sleep, attention and fatigue.

Awards

Swiss National Science Foundation (SNSF) Advanced Researcher Fellowship (2011-2014) for "Mobile Health Monitoring for Remote Locations of the Developing World".

STA (Society of Technology in Anesthesia) Excellence in Technology Innovation Award at the Annual Meeting of the American Society of Anesthesiologists 2010 in San Diego for the abstract "Capillary Refill Time Assessment Using a Mobile Phone Application" co-authored by W. Karlen, C. Petersen, A. Pickard, G.A. Dumont & J.M. Ansermino.

Canadian Institutes of Health Research (CIHR) Post-Doctoral Fellowship (2010-2012) for "Smart analysis of exhaled carbon dioxide: algorithm development and clinical evaluation".

Child and Family Research Institute (CFRI) Postdoctoral Fellowship (2010)

Biography

Walter Karlen received his M.Sc. degree in micro-engineering from the Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland in 2005. He obtained the degree of Docteur ès sciences (PhD) from the doctoral program in Computer, Communication and Information Sciences of EPFL in April 2009. For the duration of his PhD, Walter Karlen was a research assistant at the Laboratory of Intelligent Systems under the supervision of Prof. Dario Floreano.

Dr. Walter Karlen is currently a post-doctoral researcher at the Deparment of Mechanical and Mechatronics Engineering at the University of Stellenbosch, South Africa, the research group of the Department of Anesthesia of BC Children's Hospital and Child and Family Research Institute, and the Department of Electrical and Computer Engineering of the University of British Columbia in Vancouver, Canada where he works on mobile phone implementations of biomedical sensors for global health applications.

From 2005 to 2009 Walter Karlen was a scientific consultant for physiological monitoring in extreme environments for Solar Impulse S.A., Switzerland.

Visit Walter's private website  

Visit the ECEM group website  

CapnoBase.org, an online database for sharing respiratory signals between researchers  

Current Research Projects

Mobile Phone Pulse Oximeter for diagnostics in low and middle income countries

Mobile communication technologies can offer effective means of bringing health care services to citizens and is also known as mHealth. MHealth has the potential to compensate for the global shortage of skilled health care workers that is drastically affecting the developing world. My research explores novel mHealth solutions to provide cost-efficient, lifesaving health checks and treatments in remote parts for the developing world. My goal is to combine innovative sensors for patient monitoring with intelligent diagnostic and treatment support on a single mobile device. This portable low-cost advisory system will give front line health care workers instant access to important information needed to diagnose diseases, prioritize patients and apply treatments on the spot. This project targets pneumonia, a lung infection which is a major cause of child death in the developing world. The target is to develop a low-cost, mobile phone based pulse oximeter to measure blood oxygen saturation (SpO2), heart rate (HR), and respiratory rate (RR). Simple spot checks of SpO2 and RR will allow for early diagnosis of pneumonia and prioritizing of patients for treatment even in the most remote locations by lay health care workers. This pulse oximeter will use the in-built camera of the mobile phone as principal sensor. A language independent user interface and a decision support engine will guide the users through the measuring procedure and provide help with diagnosis and treatment. Additional support will be available through remote diagnosis by a clinical expert using the wireless communication facilities of the phone. Measurement data and diagnosis will be communicated in both directions between lay health care workers and experts. If widely adopted, this novel mHealth solution has the potential to reduce unnecessary deaths of children in the developing world and reduce the cost of providing lifesaving diagnosis and treatment.

We are developing many new concepts for pulse oximetry on a mobile phone. Visit phoneoximeter.org for more information.

 

Previous Projects

Automatic Capnogram Analysis in Anesthesia

Together with Prof. Guy Dumont (Department of Electrical and Computer Engineering, UBC) and Dr. Mark Ansermino (Research Unit for Pediatric Anesthesia, BC Children's Hospital) I was researching on algorithms for automated capnogram (CO2 concentration in expired gases) analysis during anesthesia. Automated event and trend detection in capnography can potentially improve the clinicians' decision-making process, reduce workload of anesthesiologists during operations, and may consequently enhance patient safety.

CapnoBase.org was part of this development.

Automated Sleep and Wake Detection With Wearable Systems (Body Sensing)

The Body Sensing project was conducted at the Laboratory of Intelligent Systems at the Ecole Polytechnique Fédérale de Lausanne (EPFL), Switzerland under the supervision of Prof. Dario Floreano. The goal of the Body Sensing project was to develop a wearable device capable of discriminating sleep and wake states of the wearer and giving feedback in a non-obtrusive way. These states could then be used as parameters for the prediction of fatigue and optimisation of sleep/wake schedules of the wearer. Since body signals related to sleep and wake are different from person to person, the wearable device incorporated learning technologies to adapt to different wearers automatically. A prototype of the wearable device wass tested on the Solar Impulse pilots during a virtual flight in 2008 and may be continued to be used for the record flight scheduled for 2011.

Further information can be found on the Body Sensing project website or under publications.

 

Selected publications

BibBase.org: www.bibbase.org/mendeley/176716c765
rss group by: generated by BibBase.org
The Phone Oximeter for Mobile Spot-Check. Dunsmuir, D.; Petersen, C.; Karlen, W.; Lim, J.; Dumont, G. A.; and Ansermino, J. M. 2012. In Proceedings of the 2012 Society for Technology in Anesthesia Annual Meeting, West Palm Beach.
_mendeley [http://www.mendeley.com/c/4521754971/p/14667/dunsmuir-2012-the-phone-oximeter-for-mobile-spot-check/] _mendeley [bib]
A Data Fusion Approach for RR estimation from PPG (STA Engineering Challenge). Raman, S.; Brouse, C. J.; Karlen, W.; Dumont, G.; and Ansermino, J. 2012. In Proceedings of the 2012 Society for Technology in Anesthesia Annual Meeting, West Palm Beach.
_mendeley [http://www.mendeley.com/c/4521602471/p/14667/raman-2012-a-data-fusion-approach-for-rr-estimation-from-ppg-sta-engineering-challenge/] _mendeley [bib]
Measuring Adequacy Of Analgesia With Cardiorespiratory Coherence. Brouse, C. J.; Karlen, W.; Dumont, G. A.; Myers, D.; Cooke, E.; Stinson, J.; Lim, J.; and Ansermino, J. M. 2012. In Proceedings of the 2012 Society for Technology in Anesthesia Annual Meeting, West Palm Beach.
_mendeley [http://www.mendeley.com/c/4521602461/p/14667/brouse-2012-measuring-adequacy-of-analgesia-with-cardiorespiratory-coherence/] _mendeley [bib]
Human-centered Phone Oximeter Interface Design for the Operating Room. Karlen, W.; Dumont, G.; Petersen, C.; Gow, J.; Lim, J.; Sleiman, J.; and Ansermino, J. M. 2011. In HEALTHINF 2011 - Proceedings of the International Conference on Health Informatics, 433-8, SciTePress, Rome, Italy.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/humancentered-phone-oximeter-interface-design-operating-room/] _mendeley [bib]
Medical intelligence article: capillary refill time: is it still a useful clinical sign?. Pickard, A.; Karlen, W.; and Ansermino, J. M. 2011. Anesthesia and analgesia, 113(1):120-3, 7.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/capillary-refill-time-it-still-useful-clinical-sign/] _mendeley [http://www.ncbi.nlm.nih.gov/pubmed/21519051] _mendeley [bib]  abstract_mendeley_4171644123folded.gif Abstract:
"Location independence in patient monitoring" - Abstracts of the 2011 Annual Meeting of the Society for Technology in Anesthesia (STA). January 12-15, 2011. Las Vegas, Nevada, USA. Karlen, W.; Blackstock, M.; and Ansermino, J. M. 2011. Anesthesia and analgesia, 113(2 Suppl):37, 8.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/location-independence-patient-monitoring/] _mendeley [http://www.ncbi.nlm.nih.gov/pubmed/21788323] _mendeley [bib]  abstract_mendeley_3615853331folded.gif Abstract:
SleepPic. Hardware Developments for a Wearable On-line Sleep and Wake Discrimination System. Karlen, W., and Floreano, D. 2011. In Proceedings of BIOSIGNALS 2011 - International Conference on Bio-inspired Systems and Signal Processing, Rome, Italy, January 26-29, 2011, 132-7, SciTePress.
_mendeley [http://www.mendeley.com/research/sleeppic-hardware-developments-wearable-online-sleep-wake-discrimination-system/] _pdf_0 [PDF] _pdf_0 [bib]  abstract_mendeley_3580209381folded.gif Abstract:
Automated Validation of Capillary Refill Time Measurements Using Photo-Plethysmogram from a Portable Device for Effective Triage in Children. Karlen, W.; Pickard, A.; Daniels, J.; Kwizera, A.; Ibingira, C.; Dumont, G.; and Ansermino, J. M. 2011. In 2011 IEEE Global Humanitarian Technology Conference, 66-71, IEEE, 10.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/automated-validation-capillary-refill-time-measurements-using-photoplethysmogram-portable-device-effective-triage-children/] _mendeley [http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=6103610] _mendeley [bib]
Respiratory rate estimation using respiratory sinus arrhythmia from photoplethysmography. Karlen, W.; Brouse, C. J.; Cooke, E.; Ansermino, J. M.; and Dumont, G. A. 2011. In Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Volume 2011, 1201-4, Boston, 8.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/respiratory-rate-estimation-using-respiratory-sinus-arrhythmia-photoplethysmography/] _mendeley [http://www.ncbi.nlm.nih.gov/pubmed/22254531] _mendeley [bib]  abstract_mendeley_3832552991folded.gif Abstract:
An Adaptive Single Frequency Phase Vocoder For Low-power Heart Rate Detection. Karlen, W.; Petersen, C.; Gow, J.; Ansermino, J. M.; and Dumont, G. A. 2011. In BIODEVICES 2011 - Proceedings of the International Conference on Biomedical Electronics and Devices, Rome, Italy, January 26-29, 2011, 30-35, INSTICC Press.
_mendeley [http://www.mendeley.com/research/adaptive-single-frequency-phase-vocoder-lowpower-heart-rate-detection-1/] _pdf_0 [PDF] _pdf_0 [bib]  abstract_mendeley_3580209371folded.gif Abstract:
Wavelet transform cardiorespiratory coherence detects patient movement during general anesthesia. Brouse, C. J.; Karlen, W.; Myers, D.; Cooke, E.; Stinson, J.; Lim, J.; Dumont, G. A.; and Ansermino, J. M. 2011. In Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Volume 2011, 6114-7, 8.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/wavelet-transform-cardiorespiratory-coherence-detects-patient-movement-during-general-anesthesia/] _mendeley [http://www.ncbi.nlm.nih.gov/pubmed/22255734] _mendeley [bib]  abstract_mendeley_3832641511folded.gif Abstract:
Adaptive Sleep-Wake Discrimination for Wearable Devices. Karlen, W., and Floreano, D. 2010. IEEE transactions on bio-medical engineering, 58(4):920-926, 12.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/adaptive-sleepwake-discrimination-wearable-devices/] _mendeley [http://www.ncbi.nlm.nih.gov/pubmed/21172750] _mendeley [bib]  abstract_mendeley_4006631973folded.gif Abstract:
CapnoBase: Signal database and tools to collect, share and annotate respiratory signals. Karlen, W.; Turner, M.; Cooke, E.; Dumont, G.; and Ansermino, J. M. 2010. In Annual Meeting of the Society for Technology in Anesthesia (STA), 25, West Palm Beach.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/c/4392020501/p/14667/karlen-2010-capnobase-signal-database-and-tools-to-collect-share-and-annotate-respiratory-signals/] _mendeley [www.capnobase.org http://capnobase.org/literature/] _mendeley [bib]
Enhancing pilot performance with a SymBodic system. Karlen, W.; Cardin, S.; Thalmann, D.; and Floreano, D. 2010. In Conference proceedings : ... Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE Engineering in Medicine and Biology Society. Conference, Volume 1, 6599-602, IEEE Engineering in Medicine and Biology Society, Buenos Aires, 1.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/enhancing-pilot-performance-symbodic-4/] _mendeley [http://www.ncbi.nlm.nih.gov/pubmed/21096516] _mendeley [bib]  abstract_mendeley_3580261781folded.gif Abstract:
Capillary Refill Time Assessment Using a Mobile Phone Application (iRefill). Karlen, W.; Petersen, C.; Pickard, A.; Dumont, G.; and Ansermino, J. 2010. In Proceedings of the 2010 Annual Meeting of the American Society Anesthesiologists, A575, American Society of Anesthesiologists, San Diego.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/capillary-refill-time-assessment-using-mobile-phone-application-irefill/] _mendeley [http://www.asaabstracts.com/strands/asaabstracts/printAbstract.htm;jsessionid=2971A813366416AB14723F09DA1C5AD0?year=2010&index=8&absnum=695&type=archive] _mendeley [bib]  abstract_mendeley_3580260141folded.gif Abstract:
Evolutionary Selection of Features for Neural Sleep/Wake Discrimination. Duerr, P.; Karlen, W.; Guignard, J.; and Mattiussi, C. 2009. Journal of Artificial Evolution and Applications, 2009:1-10.
Evolutionary Selection of Features for Neural Sleep/Wake Discrimination [HTML] _mendeley [http://www.mendeley.com/research/evolutionary-selection-of-features-for-neural-sleepwake-discrimination/] _pdf_0 [PDF] _pdf_0 [bib]
Sleep and Wake Classification With ECG and Respiratory Effort Signals. Karlen, W.; Mattiussi, C.; and Floreano, D. 2009. IEEE Transactions on Biomedical Circuits and Systems, 3(2):71-8.
_mendeley [http://www.mendeley.com/research/sleep-and-wake-classification-with-ecg-and-respiratory-effort-signals/] _pdf_0 [PDF] _pdf_0 [bib]  abstract_mendeley_3580263241folded.gif Abstract:
Adaptive Wake and Sleep Detection for Wearable Systems. Karlen, W. 2009.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/adaptive-wake-and-sleep-detection-for-wearable-systems/] _mendeley [http://library.epfl.ch/en/theses/?nr=4391] _mendeley [bib]  abstract_mendeley_3580263311folded.gif Abstract:
Improving actigraph sleep/wake classification with cardio-respiratory signals. Karlen, W.; Mattiussi, C.; and Floreano, D. 2008. In Annual International Conference of the IEEE Engineering in Medicine and Biology Society, Volume 2008, 5262-5, IEEE Engineering in Medicine and Biology Society, Vancouver, 1.
_pdf_0 [PDF] _mendeley [http://www.mendeley.com/research/improving-actigraph-sleepwake-classification-with-cardiorespiratory-signals/] _mendeley [bib]  abstract_mendeley_3580263251folded.gif Abstract:
Robot-animal interaction: Perception and behavior of insbot. Asadpour, M.; Tâche, F.; Caprari, G.; Karlen, W.; and Siegwart, R. 2006. International Journal of Advanced Robotic Systems, 3(2):093-098.
_mendeley [http://www.mendeley.com/research/robotanimal-interaction-perception-and-behavior-of-insbot/] _pdf_0 [PDF] _pdf_0 [http://www.intechweb.org/volume.php?issn=1729-8806&v=3&n=2] _pdf_0 [bib]  abstract_mendeley_3580263231folded.gif Abstract:
Perception and behavior of InsBot : Robot-Animal interaction issues. Tache, F.; Asadpour, M.; Caprari, G.; Karlen, W.; and Siegwart, R. 2005. In 2005 IEEE International Conference on Robotics and Biomimetics - ROBIO, 517-522, IEEE.
Perception and behavior of InsBot : Robot-Animal interaction issues [http://ieeexplore.ieee.org/lpdocs/epic03/wrapper.htm?arnumber=1708798] _mendeley [http://www.mendeley.com/research/perception-and-behavior-of-insbot-robotanimal-interaction-issues/] _pdf_0 [PDF] _pdf_0 [bib]  abstract_mendeley_3580263201folded.gif Abstract:
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